<?xml version="1.0" encoding="utf-8"?><!DOCTYPE article  PUBLIC '-//OASIS//DTD DocBook XML V4.4//EN'  'http://www.docbook.org/xml/4.4/docbookx.dtd'><article><articleinfo><title>AfniInformation</title><revhistory><revision><revnumber>5</revnumber><date>2013-03-07 21:23:01</date><authorinitials>localhost</authorinitials><revremark>converted to 1.6 markup</revremark></revision><revision><revnumber>4</revnumber><date>2007-04-17 15:28:12</date><authorinitials>devel03.mrc-cbu.cam.ac.uk</authorinitials></revision><revision><revnumber>3</revnumber><date>2007-03-01 00:40:22</date><authorinitials>host86-136-197-103.range86-136.btcentralplus.com</authorinitials></revision><revision><revnumber>2</revnumber><date>2007-03-01 00:38:12</date><authorinitials>host86-136-197-103.range86-136.btcentralplus.com</authorinitials></revision><revision><revnumber>1</revnumber><date>2007-03-01 00:33:39</date><authorinitials>host86-136-197-103.range86-136.btcentralplus.com</authorinitials><revremark>a</revremark></revision></revhistory></articleinfo><section><title>AFNI</title><para>To quote from the AFNI website: <ulink url="http://afni.nimh.nih.gov/afni/"/>  </para><itemizedlist><listitem override="none"><para>AFNI is a set of C programs for processing, analyzing, and displaying functional MRI (FMRI) data - a technique for mapping human brain activity. It runs on Unix+X11+Motif systems, including SGI, Solaris, Linux, and Mac OS X. It is available free (in C source code format, and some precompiled binaries) for research purposes. </para></listitem></itemizedlist><para>To use AFNI on the CBU system: </para><screen><![CDATA[source /imaging/local/linux/bin/afni.csh
afni]]></screen><para>The example data and documentation are in subdirectories of <code>/imaging/local/linux/afni</code> </para><para>For my (<ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/AfniInformation/imaging/MatthewBrett#">MatthewBrett</ulink>) reference, <ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/AfniInformation/imaging/AfniInstallationNotes#">AfniInstallationNotes</ulink> </para></section></article>