= Software for imaging at the CBU =
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 [wiki:LearningMatlab Matlab]. Useful for advanced work with SPM, and in understanding how SPM analyses neuroimaging data. Useful also for custom analyses with image data
 
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 [wiki:UsingSpm SPM] - Various guides on the theory and practice of SPM.
 
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 [wiki:UsingAnalyze AnalyzeAVW] - a comprehensive commercial program for viewing neuroimaging data. Particularly useful for rendering.
 
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 [[Anchor(mricro)]] Chris Rorden's [http://www.psychology.nottingham.ac.uk/staff/cr1/mricro.html MRIcro] - an excellent free, functional, and simple program for viewing neuroimages. It runs on Windows only.
 
  * [http://www.psychology.nottingham.ac.uk/staff/cr1/mritut.html MRIcro tutorial], with instructions on creating a region of interest, and prepare scans of damaged brains for spatial normalisation.
 
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 Krish Singh's [http://www.psychology.nottingham.ac.uk/staff/cr1/mri3dtut.html mri3d] - an excellent display tool, particularly for rendering of results onto brain surfaces.
 
 * [http://www.psychology.nottingham.ac.uk/staff/cr1/dicom.html freeware DICOM viewer and information], again for Windows, again by Chris Rorden
 * [http://www.mrc-cbu.cam.ac.uk/Imaging/Common/iv_volumetool.shtml iv_volumetool] - an image viewer from the PET group at the Université Catholique de Louvain, Belgium
 * [wiki:ImageViewer Viewer] - a simple matlab image viewer
 * [wiki:Ana4Dto3D ana4dto3d] - a tiny command line utility to convert Analyze 4D files to a series of 3D files, as well as byte swapping as required
 * [http://www.mrc-cbu.cam.ac.uk/Imaging/Common/pvconv.shtml pvconv] - a perl command line utility to convert [wiki:FormatBruker Bruker data format] to [wiki:FormatAnalyze Analyze image format]
 * [http://bishopw.loni.ucla.edu/AIR3/index.shtml AIR] - the Automated Image Realignment program, by Roger Woods
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 [wiki:Mpr mpr] - coregistration software, for matching MRIs to PET scans, CT scans etc in any combination. mpr is more robust than SPM for difficult coregistrations, including those where the brain is damaged.
 
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 [wiki:ReadingOnlineDocs Software and help on reading documents online] - such as Adobe Acrobat for pdf files and Ghostview for reading postcript (.ps) files.
 
Matthew Brett 7/10/99