<?xml version="1.0" encoding="utf-8"?><!DOCTYPE article  PUBLIC '-//OASIS//DTD DocBook XML V4.4//EN'  'http://www.docbook.org/xml/4.4/docbookx.dtd'><article><articleinfo><title>Connectivity_Analysis</title><revhistory><revision><revnumber>12</revnumber><date>2013-03-07 21:23:47</date><authorinitials>localhost</authorinitials><revremark>converted to 1.6 markup</revremark></revision><revision><revnumber>11</revnumber><date>2011-09-26 10:47:22</date><authorinitials>MicheleVeldsman</authorinitials></revision><revision><revnumber>10</revnumber><date>2011-09-26 10:42:37</date><authorinitials>MicheleVeldsman</authorinitials></revision><revision><revnumber>9</revnumber><date>2011-09-26 07:23:28</date><authorinitials>MicheleVeldsman</authorinitials></revision><revision><revnumber>8</revnumber><date>2011-09-26 07:23:10</date><authorinitials>MicheleVeldsman</authorinitials></revision><revision><revnumber>7</revnumber><date>2011-09-21 17:43:41</date><authorinitials>MicheleVeldsman</authorinitials></revision><revision><revnumber>6</revnumber><date>2011-09-21 17:15:07</date><authorinitials>MicheleVeldsman</authorinitials></revision><revision><revnumber>5</revnumber><date>2011-09-21 17:14:51</date><authorinitials>MicheleVeldsman</authorinitials></revision><revision><revnumber>4</revnumber><date>2011-09-21 17:13:23</date><authorinitials>MicheleVeldsman</authorinitials></revision><revision><revnumber>3</revnumber><date>2011-09-21 17:12:09</date><authorinitials>MicheleVeldsman</authorinitials></revision><revision><revnumber>2</revnumber><date>2011-09-21 16:49:00</date><authorinitials>MicheleVeldsman</authorinitials></revision><revision><revnumber>1</revnumber><date>2011-09-21 16:47:29</date><authorinitials>MicheleVeldsman</authorinitials></revision></revhistory></articleinfo><para><emphasis role="underline"><emphasis role="strong">DCM, PPI,SEM</emphasis></emphasis></para><para>You can download a copy of Charlotte and Emma's talks here: <ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/Connectivity_Analysis/imaging/Connectivity_Analysis?action=AttachFile&amp;do=get&amp;target=DCM.ppt">DCM.ppt</ulink>, <ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/Connectivity_Analysis/imaging/Connectivity_Analysis?action=AttachFile&amp;do=get&amp;target=connectivity.pptx">connectivity.pptx</ulink> </para><para><emphasis role="underline"><emphasis role="strong">Web Resources</emphasis></emphasis></para><para>Below is a list of web resources used in the talk </para><para><emphasis role="strong">DCM</emphasis></para><para> <ulink url="http://imaging.mrc-cbu.cam.ac.uk/imaging/ConIG">ConIG</ulink></para><itemizedlist><listitem override="none"><para>CBU's Connectivity Interest Group. In particular, see Rik’s and James’ talks (“Introduction to DCM”; “Advanced DCM”) </para></listitem></itemizedlist><para><ulink url="http://www.fil.ion.ucl.ac.uk/spm/doc/manual.pdf">SPM Manual</ulink></para><itemizedlist><listitem override="none"><para>SPM Manual,pg 299-312. </para></listitem></itemizedlist><para><emphasis role="underline"><emphasis role="strong">References</emphasis></emphasis></para><para><emphasis role="strong">PPI and SEM</emphasis></para><para>J.B. Rowe, L.E. Hughes, R.A. Barker,&amp; A.M. Owen (2010). Dynamic causal modelling of effective connectivity from fMRI: Are results reproducible and sensitive to Parkinson's disease and its treatment? Neuroimage, 52(3): 1015–1026.</para><para> <ulink url="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3021391/">DOI:10.1016/j.neuroimage.2009.12.080</ulink></para><para> Rowe et al. (2002) Attention to action in Parkinson’s disease: impaired effective connectivity among frontal cortical regions. Brain, 125:276-289 </para><para> <ulink url="http://eprints.ucl.ac.uk/143615/">Abstract</ulink> </para><para><emphasis role="strong">DCM</emphasis></para><para> The original DCM paper </para><para> Friston KJ, Harrison L, Penny W, (2003). Dynamic causal modelling.Neuroimage,19(4):1273-302.</para><para> <ulink url="http://www.ncbi.nlm.nih.gov/pubmed/12948688/">PMID: 12948688</ulink></para><para>Stephan KE, Penny WD, Moran RJ, et al.,(2010).Ten simple rules for dynamic causal modeling. Neuroimage, 15;49(4):3099-109.</para><para> <ulink url="http://www.ncbi.nlm.nih.gov/pubmed?term=Neuroimage%2C%2049%3A3099-3109/">PMID: 19914382</ulink></para><para><emphasis role="strong">Example Applications of DCM</emphasis></para><para>Ewbank, M., Lawson, R., Henson, R.N., Rowe, J., Passamonti, L. &amp; Calder, C. (2011). Changes in 'top-down' connectivity underlie repetition suppression in the ventral visual pathway. Journal of Neuroscience, 31, 5635-5642. </para><para> <ulink url="http://www.ncbi.nlm.nih.gov/pubmed?term=Journal%20of%20Neuroscience%2C%2031%2C%205635-5642/">PMID: 21490204</ulink> </para><para>Rowe J. B., Hughes L. E., Barker R. A., Owen A. M. (2010). Dynamic causal modelling of effective connectivity from fMRI: are results reproducible and sensitive to Parkinson's disease and its treatment? Neuroimage 52, 1015–1026. doi: 10.1016/j.neuroimage.2009.12.080.</para><para> <ulink url="http://www.ncbi.nlm.nih.gov/pubmed?term=Neuroimage%2C%2052%3A1015-1026/">PMID: 20056151</ulink> </para></article>