<?xml version="1.0" encoding="utf-8"?><!DOCTYPE article  PUBLIC '-//OASIS//DTD DocBook XML V4.4//EN'  'http://www.docbook.org/xml/4.4/docbookx.dtd'><article><articleinfo><title>FmriAnalysisProblems</title><revhistory><revision><revnumber>27</revnumber><date>2013-03-07 21:24:03</date><authorinitials>localhost</authorinitials><revremark>converted to 1.6 markup</revremark></revision><revision><revnumber>26</revnumber><date>2010-06-11 16:12:30</date><authorinitials>JohanCarlin</authorinitials></revision><revision><revnumber>25</revnumber><date>2009-10-27 16:48:34</date><authorinitials>JohanCarlin</authorinitials></revision><revision><revnumber>24</revnumber><date>2009-10-27 16:43:50</date><authorinitials>JohanCarlin</authorinitials></revision><revision><revnumber>23</revnumber><date>2009-10-27 16:43:03</date><authorinitials>JohanCarlin</authorinitials></revision><revision><revnumber>22</revnumber><date>2009-03-19 15:13:41</date><authorinitials>JohanCarlin</authorinitials></revision><revision><revnumber>21</revnumber><date>2007-05-10 14:39:14</date><authorinitials>devel03.mrc-cbu.cam.ac.uk</authorinitials></revision><revision><revnumber>20</revnumber><date>2007-01-07 21:58:08</date><authorinitials>host86-136-197-103.range86-136.btcentralplus.com</authorinitials></revision><revision><revnumber>19</revnumber><date>2006-10-06 11:06:15</date><authorinitials>devel03.mrc-cbu.cam.ac.uk</authorinitials></revision><revision><revnumber>18</revnumber><date>2006-10-06 11:05:21</date><authorinitials>devel03.mrc-cbu.cam.ac.uk</authorinitials><revremark>Getting ready for new version</revremark></revision><revision><revnumber>17</revnumber><date>2006-09-04 20:19:30</date><authorinitials>RikHenson</authorinitials></revision><revision><revnumber>16</revnumber><date>2006-09-04 20:16:29</date><authorinitials>RikHenson</authorinitials></revision><revision><revnumber>15</revnumber><date>2006-09-04 13:45:53</date><authorinitials>JamesRowe</authorinitials></revision><revision><revnumber>14</revnumber><date>2006-09-04 11:14:51</date><authorinitials>DorisEckstein</authorinitials></revision><revision><revnumber>13</revnumber><date>2006-09-04 11:14:43</date><authorinitials>JamesRowe</authorinitials></revision><revision><revnumber>12</revnumber><date>2006-09-04 10:55:51</date><authorinitials>DorisEckstein</authorinitials></revision><revision><revnumber>11</revnumber><date>2006-09-04 10:30:01</date><authorinitials>RhodriCusack</authorinitials></revision><revision><revnumber>10</revnumber><date>2006-09-04 10:29:25</date><authorinitials>RhodriCusack</authorinitials></revision><revision><revnumber>9</revnumber><date>2006-09-04 10:11:16</date><authorinitials>cmbg-cache-2.server.ntli.net</authorinitials></revision><revision><revnumber>8</revnumber><date>2006-09-04 10:10:22</date><authorinitials>cmbg-cache-2.server.ntli.net</authorinitials></revision><revision><revnumber>7</revnumber><date>2006-09-04 08:43:35</date><authorinitials>RhodriCusack</authorinitials></revision><revision><revnumber>6</revnumber><date>2006-09-04 08:43:13</date><authorinitials>RhodriCusack</authorinitials></revision><revision><revnumber>5</revnumber><date>2006-09-04 08:36:09</date><authorinitials>RhodriCusack</authorinitials></revision><revision><revnumber>4</revnumber><date>2006-09-04 08:30:18</date><authorinitials>RhodriCusack</authorinitials></revision><revision><revnumber>3</revnumber><date>2006-09-01 19:09:11</date><authorinitials>DorisEckstein</authorinitials></revision><revision><revnumber>2</revnumber><date>2006-09-01 13:13:21</date><authorinitials>RhodriCusack</authorinitials></revision><revision><revnumber>1</revnumber><date>2006-09-01 13:08:32</date><authorinitials>RhodriCusack</authorinitials></revision></revhistory></articleinfo><section><title>FMRI analysis problems</title><para>Here is an incomplete list of problems we've come up against in FMRI analysis: </para><itemizedlist><listitem><para><ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/FmriAnalysisProblems/imaging/RemoveBadScans#">RemoveBadScans</ulink> </para></listitem><listitem><para><ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/FmriAnalysisProblems/imaging/ProblemTwoPassNormalization#">ProblemTwoPassNormalization</ulink> </para></listitem><listitem><para><ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/FmriAnalysisProblems/imaging/ReverseNormalization#">ReverseNormalization</ulink> </para></listitem><listitem><para><ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/FmriAnalysisProblems/imaging/Transforming_SPM_world_coordinates_to_voxel_coordinates#">Transforming_SPM_world_coordinates_to_voxel_coordinates</ulink> </para></listitem><listitem><para><ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/FmriAnalysisProblems/imaging/GettingaRegionsCentreOfMass#">Getting a region's centre of mass</ulink> </para></listitem><listitem><para><ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/FmriAnalysisProblems/imaging/Extracting_beta%2C_standard_error_and_confidence_interval_for_a_coordinate#">Extracting_beta,_standard_error_and_confidence_interval_for_a_coordinate</ulink> </para></listitem></itemizedlist></section></article>