<?xml version="1.0" encoding="utf-8"?><!DOCTYPE article  PUBLIC '-//OASIS//DTD DocBook XML V4.4//EN'  'http://www.docbook.org/xml/4.4/docbookx.dtd'><article><articleinfo><title>SecondLevel</title><revhistory><revision><revnumber>15</revnumber><date>2013-03-07 21:23:08</date><authorinitials>localhost</authorinitials><revremark>converted to 1.6 markup</revremark></revision><revision><revnumber>14</revnumber><date>2011-08-31 12:27:13</date><authorinitials>MicheleVeldsman</authorinitials></revision><revision><revnumber>13</revnumber><date>2011-08-31 12:26:23</date><authorinitials>MicheleVeldsman</authorinitials></revision><revision><revnumber>12</revnumber><date>2011-08-31 12:26:03</date><authorinitials>MicheleVeldsman</authorinitials></revision><revision><revnumber>11</revnumber><date>2011-08-31 12:23:50</date><authorinitials>MicheleVeldsman</authorinitials></revision><revision><revnumber>10</revnumber><date>2011-08-31 12:23:34</date><authorinitials>MicheleVeldsman</authorinitials></revision><revision><revnumber>9</revnumber><date>2011-08-31 12:22:55</date><authorinitials>MicheleVeldsman</authorinitials></revision><revision><revnumber>8</revnumber><date>2011-08-31 12:22:47</date><authorinitials>MicheleVeldsman</authorinitials></revision><revision><revnumber>7</revnumber><date>2011-08-31 12:21:09</date><authorinitials>MicheleVeldsman</authorinitials></revision><revision><revnumber>6</revnumber><date>2011-08-31 12:19:35</date><authorinitials>MicheleVeldsman</authorinitials></revision><revision><revnumber>5</revnumber><date>2011-08-31 12:18:46</date><authorinitials>MicheleVeldsman</authorinitials></revision><revision><revnumber>4</revnumber><date>2011-08-31 12:18:34</date><authorinitials>MicheleVeldsman</authorinitials></revision><revision><revnumber>3</revnumber><date>2011-08-31 12:17:42</date><authorinitials>MicheleVeldsman</authorinitials></revision><revision><revnumber>2</revnumber><date>2011-08-31 12:00:52</date><authorinitials>MicheleVeldsman</authorinitials></revision><revision><revnumber>1</revnumber><date>2011-08-31 11:44:15</date><authorinitials>MicheleVeldsman</authorinitials></revision></revhistory></articleinfo><para><emphasis role="underline"><emphasis role="strong">Second Level Analysis: Multiple Comparisons, SVC, ROI analysis</emphasis></emphasis></para><para>You can download a copy of Nadja and Ben's talks here: <ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/SecondLevel/imaging/SecondLevel?action=AttachFile&amp;do=get&amp;target=SecondLevel.ppt">SecondLevel.ppt</ulink> <ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/SecondLevel/imaging/SecondLevel?action=AttachFile&amp;do=get&amp;target=ROIAnalysis.pptx">ROIAnalysis.pptx</ulink> </para><para><emphasis role="underline"><emphasis role="strong">Web Resources</emphasis></emphasis></para><para>Below is a list of web resources used in the talk </para><para> <ulink url="http://fmri.wfubmc.edu/downloads/WFU_PickAtlas_User_Manual.pdf">PickAtlas</ulink></para><para> <ulink url="http://www.fil.ion.ucl.ac.uk/spm/">UCL's Pages</ulink></para><para><emphasis role="strong">Multiple Subjects</emphasis></para><para> <ulink url="http://mindhive.mit.edu/node/92">RFX and FFX on The MIT Wiki</ulink></para><para> <ulink url="http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2/pdfs/Ch12.pdf">Penny and Holmes(2003)</ulink></para><para> <emphasis role="strong">ROI Analysis</emphasis></para><para><ulink url="http://mindhive.mit.edu/node/101">ROI FAQ on The MIT Wiki</ulink></para><para> <ulink url="http://marsbar.sourceforge.net/index.html">MarsBaR</ulink></para><para> <ulink url="http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach">tal2mni &amp; mni2tal scripts</ulink></para><para><emphasis role="underline"><emphasis role="strong">References</emphasis></emphasis></para><para> <emphasis role="strong">Random Field Theory</emphasis></para><para> <ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/SecondLevel/imaging/SecondLevel?action=AttachFile&amp;do=get&amp;target=Brett2003.pdf">Brett2003.pdf</ulink> Brett et al., (2003) An Introduction to Random Field Theory</para><para> <ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/SecondLevel/imaging/SecondLevel?action=AttachFile&amp;do=get&amp;target=Worsley2003.pdf">Worsley2003.pdf</ulink> Worsley et al., (2003) Developments in Random Field Theory </para><para><emphasis role="strong">ROI Analysis</emphasis></para><para>Friston, K. J., Rotshtein, P., Geng, J. J., Sterzer, P., &amp; Henson, R. N. (2006). A critique of functional localisers. <emphasis>Neuroimage</emphasis>, 30(4), 1077-87. </para><itemizedlist><listitem override="none"><para><ulink url="http://www.ncbi.nlm.nih.gov/pubmed/16635579">PMID: 16635579</ulink></para></listitem></itemizedlist><para>Saxe, R., Brett, M., &amp; Kanwisher, N. (2006). Divide and conquer: a defense of functional localizers. <emphasis>Neuroimage</emphasis>, 30(4), 1088-96; discussion 1097-9.</para><itemizedlist><listitem override="none"><para><ulink url="http://www.ncbi.nlm.nih.gov/pubmed/16635578">PMID: 16635578</ulink></para></listitem></itemizedlist><para>Poldrack, R. a, &amp; Mumford, J. a. (2009). Independence in ROI analysis: where is the voodoo? Social cognitive and affective neuroscience, 4(2), 208-13.</para><itemizedlist><listitem override="none"><para><ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/SecondLevel/imaging/SecondLevel?action=AttachFile&amp;do=get&amp;target=IndependenceROI.pdf">IndependenceROI.pdf</ulink> </para></listitem></itemizedlist><para>Begging the Question: The Non-Independence Error in fMRI Data Analysis, Edward Vul, Nancy Kanwisher</para><itemizedlist><listitem override="none"><para><ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/SecondLevel/imaging/SecondLevel?action=AttachFile&amp;do=get&amp;target=VulKanwisher.pdf">VulKanwisher.pdf</ulink> </para></listitem></itemizedlist><para>Nieto-Castanon, A., Ghosh, S. S., Tourville, J. a, &amp; Guenther, F. H. (2003). Region of interest based analysis of functional imaging data. <emphasis>Neuroimage</emphasis>, 19(4), 1303-1316. </para><itemizedlist><listitem override="none"><para><ulink url="http://ukpmc.ac.uk/abstract/MED/12948689/reload=0;jsessionid=E0DA881F9ABA5E384C4618EDD4663065">DOI: 10.1016/S1053-8119(03)00188-5</ulink></para></listitem></itemizedlist><para>Poldrack, R. A., (2007) Region of Interest Analysis for fMRI. <emphasis>SCAN</emphasis>, (2) 67-70</para><itemizedlist><listitem override="none"><para><ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/SecondLevel/imaging/SecondLevel?action=AttachFile&amp;do=get&amp;target=PoldrackROIAnalysis.pdf">PoldrackROIAnalysis.pdf</ulink> </para></listitem></itemizedlist><para>Kawabata, Devlin (2011) Improving the reliability of functional localizers. <emphasis>Neuroimage</emphasis> </para><itemizedlist><listitem override="none"><para><ulink url="http://www.ncbi.nlm.nih.gov/pubmed/21600292">PMID: 21600292</ulink> </para></listitem></itemizedlist></article>