<?xml version="1.0" encoding="utf-8"?><!DOCTYPE article  PUBLIC '-//OASIS//DTD DocBook XML V4.4//EN'  'http://www.docbook.org/xml/4.4/docbookx.dtd'><article><articleinfo><title>SpmMiniCourse2007</title><revhistory><revision><revnumber>12</revnumber><date>2013-03-07 21:23:59</date><authorinitials>localhost</authorinitials><revremark>converted to 1.6 markup</revremark></revision><revision><revnumber>11</revnumber><date>2007-09-11 08:54:27</date><authorinitials>RikHenson</authorinitials></revision><revision><revnumber>10</revnumber><date>2007-09-11 08:54:11</date><authorinitials>RikHenson</authorinitials></revision><revision><revnumber>9</revnumber><date>2007-09-11 08:53:30</date><authorinitials>RikHenson</authorinitials></revision><revision><revnumber>8</revnumber><date>2007-09-11 08:52:44</date><authorinitials>RikHenson</authorinitials></revision><revision><revnumber>7</revnumber><date>2007-03-29 18:51:53</date><authorinitials>host81-157-199-35.range81-157.btcentralplus.com</authorinitials></revision><revision><revnumber>6</revnumber><date>2007-03-29 18:51:05</date><authorinitials>host81-157-199-35.range81-157.btcentralplus.com</authorinitials></revision><revision><revnumber>5</revnumber><date>2007-03-12 12:25:48</date><authorinitials>RikHenson</authorinitials></revision><revision><revnumber>4</revnumber><date>2007-03-12 12:25:09</date><authorinitials>RikHenson</authorinitials></revision><revision><revnumber>3</revnumber><date>2007-03-09 20:45:55</date><authorinitials>callosum.BIC.Berkeley.EDU</authorinitials></revision><revision><revnumber>2</revnumber><date>2007-03-09 20:44:47</date><authorinitials>l13.mrc-cbu.cam.ac.uk</authorinitials></revision><revision><revnumber>1</revnumber><date>2007-03-09 20:39:54</date><authorinitials>callosum.BIC.Berkeley.EDU</authorinitials></revision></revhistory></articleinfo><section><title>SPM5 fMRI CBU course for 27th Feb, 2007</title><informaltable><tgroup cols="4"><colspec colname="col_0"/><colspec colname="col_1"/><colspec colname="col_2"/><colspec colname="col_3"/><tbody><row rowsep="1"><entry colsep="1" rowsep="1"><para>MRI Physics in a Nutshell </para></entry><entry colsep="1" rowsep="1"><para><ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/SpmMiniCourse2007/imaging/ChristianSchwarzbauer#">ChristianSchwarzbauer</ulink> </para></entry><entry colsep="1" rowsep="1"><para>T1, T2, T2*, BOLD contrast, structural MRI, functional MRI (EPI) </para></entry><entry colsep="1" rowsep="1"><para> <ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/SpmMiniCourse2007/imaging/SpmMiniCourse2007?action=AttachFile&amp;do=get&amp;target=cbu_spm_course_2007_cs.ppt">cbu_spm_course_2007_cs.ppt</ulink> </para></entry></row><row rowsep="1"><entry colsep="1" rowsep="1"><para>Biophysics of BOLD and common image artifacts </para></entry><entry colsep="1" rowsep="1"><para><ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/SpmMiniCourse2007/imaging/RhodriCusack#">RhodriCusack</ulink> </para></entry><entry colsep="1" rowsep="1"><para>BOLD, susceptibility, fieldmaps, common artifacts </para></entry><entry colsep="1" rowsep="1"><para> <ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/SpmMiniCourse2007/imaging/SpmMiniCourse2007?action=AttachFile&amp;do=get&amp;target=cbu_spm_course_2007_rc_biophysics.ppt">cbu_spm_course_2007_rc_biophysics.ppt</ulink> </para></entry></row><row rowsep="1"><entry colsep="1" rowsep="1"><para>Spatial Preprocessing </para></entry><entry colsep="1" rowsep="1"><para><ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/SpmMiniCourse2007/imaging/MatthewBrett#">MatthewBrett</ulink> </para></entry><entry colsep="1" rowsep="1"><para>realignment, normalisation, smoothing, segmenting </para></entry><entry colsep="1" rowsep="1"><para> <ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/SpmMiniCourse2007/imaging/SpmMiniCourse2007?action=AttachFile&amp;do=get&amp;target=cbu_spm_course_2007_mb_spatial.ppt">cbu_spm_course_2007_mb_spatial.ppt</ulink> </para></entry></row><row rowsep="1"><entry colsep="1" rowsep="1"><para>The GLM and Friends </para></entry><entry colsep="1" rowsep="1"><para><ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/SpmMiniCourse2007/imaging/IanNimmoSmith#">IanNimmoSmith</ulink> </para></entry><entry colsep="1" rowsep="1"><para>OLS, ML, EM, ReML, nonsphericity </para></entry><entry colsep="1" rowsep="1"><para> <ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/SpmMiniCourse2007/imaging/SpmMiniCourse2007?action=AttachFile&amp;do=get&amp;target=cbu_spm_course_2007_ins.ppt">cbu_spm_course_2007_ins.ppt</ulink> </para></entry></row><row rowsep="1"><entry colsep="1" rowsep="1"><para>Convolution Models </para></entry><entry colsep="1" rowsep="1"><para><ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/SpmMiniCourse2007/imaging/RikHenson#">RikHenson</ulink> </para></entry><entry colsep="1" rowsep="1"><para>HRF, temporal basis functions, highpass filter, autocorrelation, nonlinearity </para></entry><entry colsep="1" rowsep="1"><para> <ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/SpmMiniCourse2007/imaging/SpmMiniCourse2007?action=AttachFile&amp;do=get&amp;target=cbu_spm_course_2007_rh_hrf.ppt">cbu_spm_course_2007_rh_hrf.ppt</ulink> </para></entry></row><row rowsep="1"><entry colsep="1" rowsep="1"><para>Statistical Inference </para></entry><entry colsep="1" rowsep="1"><para><ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/SpmMiniCourse2007/imaging/MatthewBrett#">MatthewBrett</ulink> </para></entry><entry colsep="1" rowsep="1"><para>Thresholding: RFT, FDR, SNPM </para></entry><entry colsep="1" rowsep="1"><para> <ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/SpmMiniCourse2007/imaging/SpmMiniCourse2007?action=AttachFile&amp;do=get&amp;target=cbu_spm_course_2007_mb_inference.ppt">cbu_spm_course_2007_mb_inference.ppt</ulink> </para></entry></row><row rowsep="1"><entry colsep="1" rowsep="1"><para>Experimental design and optimisation </para></entry><entry colsep="1" rowsep="1"><para><ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/SpmMiniCourse2007/imaging/RikHenson#">RikHenson</ulink> </para></entry><entry colsep="1" rowsep="1"><para>Factorial designs, conjunctions, blocked/randomised, efficiency </para></entry><entry colsep="1" rowsep="1"><para> <ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/SpmMiniCourse2007/imaging/SpmMiniCourse2007?action=AttachFile&amp;do=get&amp;target=cbu_spm_course_2007_rh_design.ppt">cbu_spm_course_2007_rh_design.ppt</ulink> </para></entry></row><row rowsep="1"><entry colsep="1" rowsep="1"><para>Effective connectivity </para></entry><entry colsep="1" rowsep="1"><para>James Rowe </para></entry><entry colsep="1" rowsep="1"><para>Three methods: PPI, SEM, DCM </para></entry><entry colsep="1" rowsep="1"><para> <ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/SpmMiniCourse2007/imaging/SpmMiniCourse2007?action=AttachFile&amp;do=get&amp;target=cbu_spm_course_2007_jr.ppt">cbu_spm_course_2007_jr.ppt</ulink> </para></entry></row><row rowsep="1"><entry colsep="1" rowsep="1"><para>Batching </para></entry><entry colsep="1" rowsep="1"><para><ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/SpmMiniCourse2007/imaging/RhodriCusack#">RhodriCusack</ulink> </para></entry><entry colsep="1" rowsep="1"><para>Batching with AA </para></entry><entry colsep="1" rowsep="1"><para> <ulink url="https://lsr-wiki-02.mrc-cbu.cam.ac.uk/imaging/SpmMiniCourse2007/imaging/SpmMiniCourse2007?action=AttachFile&amp;do=get&amp;target=cbu_spm_course_2007_rc_aa.ppt">cbu_spm_course_2007_rc_aa.ppt</ulink> </para></entry></row></tbody></tgroup></informaltable></section></article>