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| '''Segment Head Surfaces:''' mne_watershed_bem |
'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Segment Head Surfaces]:''' |
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| '''Prepare MRI Data for MNE:''' | mne_watershed_bem '''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Prepare MRI Data for MNE]:''' |
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| '''Set Up BEM Information for MNE:''' mne_setup_forward_model |
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| '''Compute Forward Solution:''' | '''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ForwardSolution Set Up BEM Information for MNE]:''' mne_setup_forward_model '''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ForwardSolution Compute Forward Solution]:''' |
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| '''Average MEG Data, Compute Covariance Matrix:''' | '''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_Averaging Average MEG Data], [http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_CovarianceMatrix Compute Covariance Matrix]:''' |
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Overview of MNE Processing Steps and Commands
[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Segment Head Surfaces]:
mne_watershed_bem
[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Prepare MRI Data for MNE]:
mne_setup_mri
Prepare Source Space (Cortical Surface) for MNE:
mne_setup_source_space
Align MEG and MRI coordinate systems
mne_analyze
[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ForwardSolution Set Up BEM Information for MNE]:
mne_setup_forward_model
[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ForwardSolution Compute Forward Solution]:
mne_do_forward_solution
[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_Averaging Average MEG Data], [http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_CovarianceMatrix Compute Covariance Matrix]:
mne_process_raw
Compute Average Cortical Surface:
make_average_subject
Create Inverse Operator (from Forward Solution):
mne_do_inverse_operator
Compute Source Estimates (Apply Inverse Operator to MEG data):
mne_make_movie
Average Source Estimates:
mne_average_estimates
Extract ROI data:
mne_make_movie
Visualisation:
mne_analyze