|
Size: 1345
Comment:
|
Size: 1982
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 2: | Line 2: |
| '''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_preprocessing Pre-processing MRI Data in Freesurfer]:''' | |
| Line 3: | Line 4: |
| * mri_convert * recon-all |
|
| Line 5: | Line 8: |
| mne_watershed_bem |
* mne_watershed_bem |
| Line 9: | Line 11: |
| mne_setup_mri | * mne_setup_mri '''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Prepare Source Space (Cortical Surface) for MNE]:''' |
| Line 11: | Line 14: |
| * mne_setup_source_space '''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Align MEG and MRI coordinate systems]:''' |
|
| Line 12: | Line 17: |
| '''Prepare Source Space (Cortical Surface) for MNE:''' mne_setup_source_space '''Align MEG and MRI coordinate systems''' mne_analyze |
* mne_analyze |
| Line 24: | Line 20: |
| mne_setup_forward_model |
* mne_setup_forward_model |
| Line 29: | Line 23: |
| mne_do_forward_solution |
* mne_do_forward_solution |
| Line 34: | Line 26: |
| mne_process_raw | * mne_process_raw '''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ComputeEstimates Compute Average Cortical Surface]:''' |
| Line 36: | Line 29: |
| * make_average_subject '''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_InverseOperator Create Inverse Operator (from Forward Solution)]:''' |
|
| Line 37: | Line 32: |
| '''Compute Average Cortical Surface:''' | * mne_do_inverse_operator '''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ComputeEstimates Compute Source Estimates (Apply Inverse Operator to MEG data)]:''' |
| Line 39: | Line 35: |
| make_average_subject | * mne_make_movie '''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ComputeEstimates Average Source Estimates]:''' |
| Line 41: | Line 38: |
| * mne_average_estimates '''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_Labels Extract ROI data]:''' |
|
| Line 42: | Line 41: |
| '''Create Inverse Operator (from Forward Solution):''' mne_do_inverse_operator '''Compute Source Estimates (Apply Inverse Operator to MEG data):''' mne_make_movie '''Average Source Estimates:''' mne_average_estimates '''Extract ROI data:''' mne_make_movie '''Visualisation:''' mne_analyze |
* mne_make_movie Visits: [[PageCount(exists)]] |
Overview of MNE Processing Steps and Commands
[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_preprocessing Pre-processing MRI Data in Freesurfer]:
- mri_convert
- recon-all
[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Segment Head Surfaces]:
- mne_watershed_bem
[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Prepare MRI Data for MNE]:
- mne_setup_mri
[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Prepare Source Space (Cortical Surface) for MNE]:
- mne_setup_source_space
[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Align MEG and MRI coordinate systems]:
- mne_analyze
[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ForwardSolution Set Up BEM Information for MNE]:
- mne_setup_forward_model
[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ForwardSolution Compute Forward Solution]:
- mne_do_forward_solution
[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_Averaging Average MEG Data], [http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_CovarianceMatrix Compute Covariance Matrix]:
- mne_process_raw
[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ComputeEstimates Compute Average Cortical Surface]:
- make_average_subject
[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_InverseOperator Create Inverse Operator (from Forward Solution)]:
- mne_do_inverse_operator
[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ComputeEstimates Compute Source Estimates (Apply Inverse Operator to MEG data)]:
- mne_make_movie
[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ComputeEstimates Average Source Estimates]:
- mne_average_estimates
[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_Labels Extract ROI data]:
- mne_make_movie
Visits: PageCount(exists)