Diff for "AnalyzingData/MNE_AllInOne" - Meg Wiki
location: Diff for "AnalyzingData/MNE_AllInOne"
Differences between revisions 7 and 9 (spanning 2 versions)
⇤ ← Revision 7 as of 2010-07-16 16:09:00 →
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Editor: YaaraErez
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← Revision 9 as of 2013-03-08 10:02:29 → ⇥
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Editor: localhost
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{{attachment:mrclogo.gif}}
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_preprocessing Pre-processing MRI Data in Freesurfer]:''' '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_preprocessing|Pre-processing MRI Data in Freesurfer]]:'''
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Segment Head Surfaces]:''' '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing|Segment Head Surfaces]]:'''
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Prepare MRI Data for MNE]:''' '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing|Prepare MRI Data for MNE]]:'''
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Prepare Source Space (Cortical Surface) for MNE]:''' '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing|Prepare Source Space (Cortical Surface) for MNE]]:'''
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing Align MEG and MRI coordinate systems]:''' '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing|Align MEG and MRI coordinate systems]]:'''
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ForwardSolution Set Up BEM Information for MNE]:''' '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ForwardSolution|Set Up BEM Information for MNE]]:'''
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ForwardSolution Compute Forward Solution]:''' '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ForwardSolution|Compute Forward Solution]]:'''
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_Averaging Average MEG Data], [http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_CovarianceMatrix Compute Covariance Matrix]:''' '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_Averaging|Average MEG Data]], [[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_CovarianceMatrix|Compute Covariance Matrix]]:'''
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ComputeEstimates Compute Average Cortical Surface]:''' '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ComputeEstimates|Compute Average Cortical Surface]]:'''
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_InverseOperator Create Inverse Operator (from Forward Solution)]:''' '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_InverseOperator|Create Inverse Operator (from Forward Solution)]]:'''
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ComputeEstimates Compute Source Estimates (Apply Inverse Operator to MEG data)]:''' '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ComputeEstimates|Compute Source Estimates (Apply Inverse Operator to MEG data)]]:'''
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ComputeEstimates Average Source Estimates]:''' '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_ComputeEstimates|Average Source Estimates]]:'''
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'''[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_Labels Extract ROI data]:''' '''[[http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_Labels|Extract ROI data]]:'''

mrclogo.gif

Overview of MNE Processing Steps and Commands

Pre-processing MRI Data in Freesurfer:

  • mri_convert
  • recon-all

Segment Head Surfaces:

  • mne_watershed_bem

Prepare MRI Data for MNE:

  • mne_setup_mri

Prepare Source Space (Cortical Surface) for MNE:

  • mne_setup_source_space

Align MEG and MRI coordinate systems:

  • mne_analyze

Set Up BEM Information for MNE:

  • mne_setup_forward_model

Compute Forward Solution:

  • mne_do_forward_solution

Average MEG Data, Compute Covariance Matrix:

  • mne_process_raw

Compute Average Cortical Surface:

  • make_average_subject

Create Inverse Operator (from Forward Solution):

  • mne_do_inverse_operator

Compute Source Estimates (Apply Inverse Operator to MEG data):

  • mne_make_movie

Average Source Estimates:

  • mne_average_estimates

Extract ROI data:

  • mne_make_movie

CbuMeg: AnalyzingData/MNE_AllInOne (last edited 2013-03-08 10:02:29 by localhost)